Petr Rysavy

Petr Rysavy
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Petr Rysavy
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Quantitative Biology - Genomics (1)
 
Computer Science - Data Structures and Algorithms (1)

Publications Authored By Petr Rysavy

To cluster sequences given only their read-set representations, one may try to reconstruct each one from the corresponding read set, and then employ conventional (dis)similarity measures such as the edit distance on the assembled sequences. This approach is however problematic and we propose instead to estimate the similarities directly from the read sets. Our approach is based on an adaptation of the Monge-Elkan similarity known from the field of databases. Read More