A. McLean - CSIRO Ict Center

A. McLean
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A. McLean
CSIRO Ict Center

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Quantitative Biology - Populations and Evolution (2)
Computer Science - Information Retrieval (1)
High Energy Physics - Experiment (1)
Physics - Instrumentation and Detectors (1)

Publications Authored By A. McLean

Authors: MicroBooNE Collaboration, R. Acciarri, C. Adams, R. An, A. Aparicio, S. Aponte, J. Asaadi, M. Auger, N. Ayoub, L. Bagby, B. Baller, R. Barger, G. Barr, M. Bass, F. Bay, K. Biery, M. Bishai, A. Blake, V. Bocean, D. Boehnlein, V. D. Bogert, T. Bolton, L. Bugel, C. Callahan, L. Camilleri, D. Caratelli, B. Carls, R. Castillo Fernandez, F. Cavanna, S. Chappa, H. Chen, K. Chen, C. Y. Chi, C. S. Chiu, E. Church, D. Cianci, G. H. Collin, J. M. Conrad, M. Convery, J. Cornele, P. Cowan, J. I. Crespo-Anadon, G. Crutcher, C. Darve, R. Davis, M. Del Tutto, D. Devitt, S. Duffin, S. Dytman, B. Eberly, A. Ereditato, D. Erickson, L. Escudero Sanchez, J. Esquivel, S. Farooq, J. Farrell, D. Featherston, B. T. Fleming, W. Foreman, A. P. Furmanski, V. Genty, M. Geynisman, D. Goeldi, B. Goff, S. Gollapinni, N. Graf, E. Gramellini, J. Green, A. Greene, H. Greenlee, T. Griffin, R. Grosso, R. Guenette, A. Hackenburg, R. Haenni, P. Hamilton, P. Healey, O. Hen, E. Henderson, J. Hewes, C. Hill, K. Hill, L. Himes, J. Ho, G. Horton-Smith, D. Huffman, C. M. Ignarra, C. James, E. James, J. Jan de Vries, W. Jaskierny, C. M. Jen, L. Jiang, B. Johnson, M. Johnson, R. A. Johnson, B. J. P. Jones, J. Joshi, H. Jostlein, D. Kaleko, L. N. Kalousis, G. Karagiorgi, T. Katori, P. Kellogg, W. Ketchum, J. Kilmer, B. King, B. Kirby, M. Kirby, E. Klein, T. Kobilarcik, I. Kreslo, R. Krull, R. Kubinski, G. Lange, F. Lanni, A. Lathrop, A. Laube, W. M. Lee, Y. Li, D. Lissauer, A. Lister, B. R. Littlejohn, S. Lockwitz, D. Lorca, W. C. Louis, G. Lukhanin, M. Luethi, B. Lundberg, X. Luo, G. Mahler, I. Majoros, D. Makowiecki, A. Marchionni, C. Mariani, D. Markley, J. Marshall, D. A. Martinez Caicedo, K. T. McDonald, D. McKee, A. McLean, J. Mead, V. Meddage, T. Miceli, G. B. Mills, W. Miner, J. Moon, M. Mooney, C. D. Moore, Z. Moss, J. Mousseau, R. Murrells, D. Naples, P. Nienaber, B. Norris, N. Norton, J. Nowak, M. OBoyle, T. Olszanowski, O. Palamara, V. Paolone, V. Papavassiliou, S. F. Pate, Z. Pavlovic, R. Pelkey, M. Phipps, S. Pordes, D. Porzio, G. Pulliam, X. Qian, J. L. Raaf, V. Radeka, A. Rafique, R. A Rameika, B. Rebel, R. Rechenmacher, S. Rescia, L. Rochester, C. Rudolf von Rohr, A. Ruga, B. Russell, R. Sanders, W. R. Sands III, M. Sarychev, D. W. Schmitz, A. Schukraft, R. Scott, W. Seligman, M. H. Shaevitz, M. Shoun, J. Sinclair, W. Sippach, T. Smidt, A. Smith, E. L. Snider, M. Soderberg, M. Solano-Gonzalez, S. Soldner-Rembold, S. R. Soleti, J. Sondericker, P. Spentzouris, J. Spitz, J. St. John, T. Strauss, K. Sutton, A. M. Szelc, K. Taheri, N. Tagg, K. Tatum, J. Teng, K. Terao, M. Thomson, C. Thorn, J. Tillman, M. Toups, Y. T. Tsai, S. Tufanli, T. Usher, M. Utes, R. G. Van de Water, C. Vendetta, S. Vergani, E. Voirin, J. Voirin, B. Viren, P. Watkins, M. Weber, T. Wester, J. Weston, D. A. Wickremasinghe, S. Wolbers, T. Wongjirad, K. Woodruff, K. C. Wu, T. Yang, B. Yu, G. P. Zeller, J. Zennamo, C. Zhang, M. Zuckerbrot

This paper describes the design and construction of the MicroBooNE liquid argon time projection chamber and associated systems. MicroBooNE is the first phase of the Short Baseline Neutrino program, located at Fermilab, and will utilize the capabilities of liquid argon detectors to examine a rich assortment of physics topics. In this document details of design specifications, assembly procedures, and acceptance tests are reported. Read More

The twin processes of viral evolutionary escape and reversion in response to host immune pressure, in particular the cytotoxic T-lymphocyte (CTL) response, shape Human Immunodeficiency Virus-1 sequence evolution in infected host populations. The tempo of CTL escape and reversion is known to differ between CTL escape variants in a given host population. Here, we ask: are rates of escape and reversion comparable across infected host populations? For three cohorts taken from three continents, we estimate escape and reversion rates at 23 escape sites in optimally defined Gag epitopes. Read More

The rates of escape and reversion in response to selection pressure arising from the host immune system, notably the cytotoxic T-lymphocyte (CTL) response, are key factors determining the evolution of HIV. Existing methods for estimating these parameters from cross-sectional population data using ordinary differential equations (ODE) ignore information about the genealogy of sampled HIV sequences, which has the potential to cause systematic bias and over-estimate certainty. Here, we describe an integrated approach, validated through extensive simulations, which combines genealogical inference and epidemiological modelling, to estimate rates of CTL escape and reversion in HIV epitopes. Read More

In this paper, we present an algorithm for automatically building expertise evidence for finding experts within an organization by combining structured corporate information with different content. We also describe our test data collection and our evaluation method. Evaluation of the algorithm shows that using organizational structure leads to a significant improvement in the precision of finding an expert. Read More